Gibson Assembly Primer Design

Design primers for seamless DNA assembly with automatic overlap generation.

Gibson assembly enables seamless joining of multiple DNA fragments using a 5′ exonuclease, DNA polymerase, and DNA ligase in a single isothermal reaction. Fragments must share ≥20 bp homology with adjacent segments (Tm ≥50°C).

Principle: Arrange DNA fragments in desired assembly order. Including vector sequence at both ends streamlines circular construct design.

Upload local FASTA file — plain FASTA, multi-FASTA, or sequences
Primer Design Options
Need details? Sequence markup, parameters, output columns and the suggested workflow are documented in Help: Gibson Assembly tool · Help: Troubleshooting