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Repeats de novo identification, masking and clustering tool

Tool for de novo identification, masking and clustering of all repeated sequences at the genomic scale. This tool detects DNA sequences for interspersed repeats and low complexity DNA sequences (simple sequence repeats or microsatellites, telomers, and satellite sequences).

Input format: Sequences can be pasted in or uploaded as files, both in FASTA format. Multiple FASTA format sequences may be pasted in at once or contained within a file.

Size limitations: The length of the query sequence and the size of the batch file are not limited.

Upload or paste sequence(s) in FASTA format:


kmer (12-99 nt):Minimal repeat length (nt):
gap (12-99 nt):

The results will appear instantly in the output fields (lower windows) - repetitive sequences in upper case. To export the results: select all (Ctrl-A), copy (Ctrl-C) and paste (Ctrl-V) to Excel sheet.

Masked sequence(s)
GFF (Generic Feature Format)



Contact
Dr. Ruslan Kalendar


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