Alignment Search

Clustering
Pair Sequence Similarity
Accepted sequences in alignment format: MEGA, GCG/MSF, Simple Alignment DIALIGN
formats, can use with this analysis.
Comparative analysis each sequences with each other, output as the matrix:
d._melanogaster
d._pseudoobscura
s._lebanonensis
s._albovittata
d._crassifemur
d._mulleri
d._affinidisjuncta
d._heteroneura
d._mimica
d._adiastola
d._nigra
100.0 89.6 84.8 81.5 81.9 83.1
81.0 81.2 81.9 80.6 80.8
89.6 100.0 85.4 81.6 81.5 85.0
82.3 82.7 82.9 81.6 82.9
84.8 85.4 100.0 80.2 80.1 84.2
81.5 81.4 82.1 81.4 82.8
81.5 81.6 80.2 100.0 93.4 84.4
87.1 87.1 87.4 87.1 87.1
81.9 81.5 80.1 93.4 100.0 84.1
87.1 86.2 86.6 86.4 86.7
83.1 85.0 84.2 84.4 84.1 100.0
86.8 86.8 86.6 86.5 86.9
81.0 82.3 81.5 87.1 87.1 86.8
100.0 97.5 95.7 95.7 93.8
81.2 82.7 81.4 87.1 86.2 86.8
97.5 100.0 96.3 95.9 94.2
81.9 82.9 82.1 87.4 86.6 86.6
95.7 96.3 100.0 95.9 94.6
80.6 81.6 81.4 87.1 86.4 86.5
95.7 95.9 95.9 100.0 93.4
80.8 82.9 82.8 87.1 86.7 86.9
93.8 94.2 94.6 93.4 100.0
Sequence Similarity Plot
User need to select the windows length for calculation average local similarity
for all given sequences. Result for Excel sheet: